Thresholds are part of the workflow
The volcano plot is driven by the selected test and control groups plus the current fold-change and p-value criteria. Significant, upregulated, downregulated, and nonsignificant counts remain visible for review.
Volcano Plots
Volcano plots that stay tied to the result table.
Master Metabolomics connects volcano plot views with group choices, fold-change thresholds, p-value thresholds, result tables, statistics, and exports in one desktop workflow.
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Move between visual and tabular review
Scientists can inspect the high-level distribution in the volcano plot, then review the molecule-level result table and statistics without switching tools.
- Fold-change ranking
- Significance filters
- Searchable molecules
- Export-ready result sets
PCA provides sample-clustering context
PCA views complement the volcano plot by showing sample clustering from the same loaded workbook, helping teams review whether group separation matches expectations.
FAQ
Common questions
Can I adjust volcano plot thresholds?
Yes. Fold-change and p-value thresholds are part of the analysis setup and are applied through the Run Analysis workflow.
Does the result table update with the plot?
Yes. The visualizations and tables are tied to the same analysis results, groups, and thresholds.
Is PCA included?
Yes. The desktop app includes a PCA tab for sample clustering context alongside volcano plots, heatmaps, statistics, and result tables.