Desktop metabolomics analysis for lab review.

Turn Skyline-style CSV or XLSX exports into reviewable plots, statistics, and result tables in one local desktop workflow.

Download desktop app Compare licenses

Windows, macOS, and Linux Analysis stays on the desktop

Analysis workflow

From workbook cleanup to export-ready results.

Each step of the analysis lives in one workbench, so you can move from raw import to reviewed comparison without losing the context that explains a result.

Workbook data cleanup and group setup in Master Metabolomics

Load, filter, and define groups.

Keep the source workbook, retained-molecule count, blank threshold, and active group comparison visible while you prepare the analysis.

  • Skyline-style CSV and XLSX import
  • Automatic or manual sample groups
  • Fold-change and p-value controls
Volcano plot and significance thresholds in Master Metabolomics

Move from thresholds to interpretable views.

The plot occupies the frame here because that is the evidence under review. Filters remain available without competing with the result.

  • Volcano plots with visible criteria
  • PCA and heatmap views from the same comparison
  • PNG, SVG, and result-table exports

Review outputs

Connected views for scientific interpretation.

Plots and tables are different views of the same processed workbook, so a signal in the volcano plot maps straight to the molecule rows, rankings, and exportable records behind it.

PCA sample clustering

Inspect sample separation and group structure from the active workbook comparison.

  • Group-colored sample scores
  • Variance explained on plotted principal components
PCA product view

Heatmaps

Use z-score heatmaps to inspect group-level structure and sample-level variation.

  • Z-score matrix for relative abundance patterns
  • Sample and group labels kept in view
Heatmap product view

Searchable tables

Move from visual signals to molecule-level rows, fold-change rankings, and exportable records.

  • Search and sort molecule-level results
  • Export reviewed tables for downstream work
Result table product view

Quality review

Completeness and outlier checks

Review missing values, per-sample completeness, and outlier flags before interpreting group differences.

Open quality workspace

Statistical summary

Analysis statistics

Keep comparison counts, fold-change ranges, and significance summaries beside the active controls.

Open statistics workspace

Processing record

Auditable processing logs

Retain a readable record of imports, exclusions, thresholds, groups, and completed analysis steps.

Open processing log

Team licensing

Desktop licenses managed for a lab environment.

Admins can invite members, track active devices, release seats, and keep desktop access tied to the right organization as a lab grows.

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Organization seats
Assign access to the right lab group and keep entitlement separate from personal devices.
Active devices
Review current workstation seats and release old machines when equipment changes.
Administrative grants
Manage time-bounded educational or lab access without changing the analysis workflow.

Plans

Licensing for individual analysts and lab teams.

Every paid plan includes the complete scientific analysis workflow. Plans differ by people, active devices, and support level.

View pricing
Individual
$49per month
Team
$99per month
Enterprise
$249per month

Downloads

Install the desktop app.

Download the latest release for your platform. Automatic updates keep the desktop app current.

Latest release links View all downloads

FAQ

Common questions.

Does analysis run in the cloud?

No. The scientific workflow runs in the desktop app. The web dashboard manages accounts, organizations, billing, and seats.

What data files can I use?

Master Metabolomics accepts CSV and XLSX files, including Skyline-style small-molecule report exports.

Can I use this with a lab team?

Yes. Organizations can manage team members, active devices, desktop seats, and granted lab access.