Skyline-Style Exports

Analyze Skyline-style metabolomics exports without rebuilding the workflow.

Master Metabolomics accepts CSV and XLSX workbooks, including Skyline-style small-molecule report exports, then guides scientists through cleanup, grouping, thresholds, statistics, and review.

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Master Metabolomics desktop workbench showing loaded molecule table

Import data and keep context visible

The loaded file context, retained molecule count, excluded rows, blank columns, and group choices stay visible in the desktop workbench so scientists do not lose track of what was analyzed.

The app is careful with language: Skyline reports are customizable, so Master Metabolomics describes support as Skyline-style small-molecule report exports rather than claiming a universal Skyline format.

Cleanup before comparison

Mode-aware adduct selection, duplicate safeguards, blank-threshold filtering, and sample sufficiency checks help reduce noisy rows before comparing groups.

  • Positive and negative mode-aware adduct handling
  • Configurable blank threshold
  • Auto-detected groups with custom group options
  • Processing log for review and reproducibility

Run analysis as an explicit step

Threshold and blank-filter changes are applied through Run Analysis, keeping state changes intentional and reviewable rather than silently recalculating while the user drags controls.

FAQ

Common questions

Can I load Excel workbooks?

Yes. The desktop workflow accepts CSV and XLSX files, including exports that follow Skyline-style small-molecule report structures.

Does blank filtering happen automatically?

The app detects blank columns and exposes a configurable threshold. Applying a new threshold is part of the explicit Run Analysis workflow.

Can I define custom sample groups?

Yes. Auto-detected groups are supported, and the workflow also includes a custom group builder for specific comparisons.