Heatmaps and PCA

Heatmaps and PCA for pattern discovery after comparison.

Master Metabolomics pairs statistical comparison with heatmaps, PCA, quality/completeness, and result summaries so scientists can review both individual molecules and broader patterns.

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Master Metabolomics heatmap analysis view

Heatmaps from the active analysis

The heatmap view uses the current analysis result set and supports z-score style visual review across samples and groups.

This keeps pattern discovery connected to the same data cleanup, grouping, and thresholds used for the statistical comparison.

Review samples and groups together

PCA and heatmap views help scientists inspect whether group labels, sample behavior, and molecular patterns make sense before exporting results.

  • Group-aware labels
  • Interactive row modes
  • Quality/completeness context
  • Processing log for audit review

Export after review

After visual inspection, results and logs can be exported for collaboration, record keeping, or downstream review.

FAQ

Common questions

Are heatmaps generated from significant molecules only?

The app supports heatmap row modes and ranking behavior tied to the current analysis results, including significant and top fold-change workflows.

Can heatmaps and PCA be used without coding?

Yes. Heatmaps and PCA are available as desktop tabs in the visual workflow.

Do heatmaps use the same groups as the analysis?

Yes. The visual views remain connected to the selected groups and analysis result set.