Metabolomics Analysis Software

Desktop metabolomics analysis software for reproducible results.

Master Metabolomics helps labs move from small-molecule exports to interpretable statistics and visuals without writing scripts or moving research data into a cloud workflow.

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Master Metabolomics desktop analysis overview with volcano plot results

Built around the analysis steps scientists repeat

The desktop workflow starts with CSV or XLSX data, then keeps the practical decisions visible: sample grouping, blank threshold, fold-change cutoff, p-value cutoff, and the current analysis state.

Instead of scattering those steps across scripts and notebooks, Master Metabolomics keeps the setup, visuals, result tables, and processing log in one local workbench.

Visuals and statistics stay connected

Volcano plots, PCA, heatmaps, statistics, quality/completeness, and searchable result tables are generated from the same selected groups and thresholds.

When thresholds change, the app makes the analysis state explicit so reviewers can understand which choices produced the current result set.

  • Welch-style statistical comparison workflow
  • Fold-change and p-value controls
  • Searchable molecule result tables
  • Exportable result sets and processing logs

Designed for local desktop work

Research data is processed on the desktop machine. The web account layer handles sign-in, subscriptions, teams, and device seats, while the scientific workbench remains a local application.

FAQ

Common questions

Does Master Metabolomics require coding?

No. The desktop app exposes common metabolomics analysis choices through the interface, including groups, thresholds, visualizations, statistics, exports, and logs.

Is this a cloud analysis platform?

No. The scientific analysis runs in the desktop app. The web dashboard manages accounts, billing, organizations, invitations, and desktop seats.

What platforms are supported?

The release flow supports Windows, macOS, and Linux installers when builds are published for the current environment.